GitHub
ProbeScope
A command-line tool for generating per-gene coverage track plots from BAM files, overlaid on panel target BED annotations with MANE-Select exon models.
ONCOSIEVE
Pan-cancer somatic variant curation pipeline that aggregates COSMIC, GENIE, ClinVar, OncoKB, and other curated sources to build a tiered whitelist for rescuing clinically relevant low-VAF variants.
DELVE
Deep-sequencing and Evaluation of Lymphoid Variant Effects.
